Pleural proteomics of pleural infection
Results from Olink Target 96 Inflammation panel
Paul Yousefi
19 November 2025
Pleural proteins
Of the 265 samples run, 256 passed the default qc performed in the
metaboprep package.
For the moment, all 92 measured proteins have been retained for analysis.
See project_metaboprep_qc_report.html for full
details
Phenotype information
The below phenotypic information was available on participants:
> tibble [256 × 51] (S3: tbl_df/tbl/data.frame)
> $ patient.id : chr [1:256] "C66ME" "C72GS" "C76EG" "C86JH" ...
> $ age : num [1:256] 91 77 82 89 72 32 79 95 43 43 ...
> $ female : num [1:256] 1 0 1 0 1 0 1 0 1 0 ...
> $ infect.fct : Factor w/ 3 levels "control","inter",..: 2 3 2 3 2 3 1 3 3 2 ...
> $ infect.num : num [1:256] 2 3 2 3 2 3 1 3 3 2 ...
> $ infect.bi : num [1:256] 0 1 0 1 0 1 0 1 1 0 ...
> $ final.diagnosis.1 : chr [1:256] "X/infection/CPPE" "X/infection/utrue" "X/infection/CPPE" "X/infection/utrue" ...
> $ paired.blood : chr [1:256] "C66ME" "C72GS" "C76EG" "C86JH" ...
> $ sex : chr [1:256] "Female" "Male" "Female" "Male" ...
> $ age.at.enrollment : num [1:256] 91 77 82 89 72 32 79 95 43 43 ...
> $ who.ps : chr [1:256] "2" "4" "2" "4" ...
> $ co.morbidity.present : chr [1:256] "Y" "Y" "Y" "Y" ...
> $ co.morbidity.list : chr [1:256] "CKD, hypertension" "COPD, IHD, hypertension" "osteoporosis, hypertension" "hypertension, AF, PMR, gilbert's syndrome" ...
> $ duration.of..symptoms : chr [1:256] "0-1 weeks" "4-6 weeks" "2-4 weeks" "1-2 weeks" ...
> $ septations : chr [1:256] "Not recorded" "Not recorded" "Not recorded" "Not recorded" ...
> $ loculations : chr [1:256] "Y" "Y" "Y" "Y" ...
> $ lights.criteria : chr [1:256] "Exudate" "Exudate" "Exudate" "Exudate" ...
> $ ph : chr [1:256] "7.45" "7.38" "7.34" "7.0780000000000003" ...
> $ crp : chr [1:256] "240" "398" "338" "245" ...
> $ wcc : chr [1:256] "13.5" "15" "18.7" "16.7" ...
> $ neutrophils : chr [1:256] "11.1" "12.1" "15.9" "15.3" ...
> $ nlr : chr [1:256] "8.5399999999999991" "5.5" "13.25" "25.5" ...
> $ pf.culture : chr [1:256] "No growth" "No growth" "No growth" "No growth" ...
> $ organism.isolated : chr [1:256] "0" "0" "0" "0" ...
> $ hospital.los : chr [1:256] "26" "15" "20" "20" ...
> $ chest.drain.insertion : chr [1:256] "Y" "Y" "Y" "Y" ...
> $ lytics : chr [1:256] "N" "N" "N" "N" ...
> $ surgery : chr [1:256] "N" "N" "Y" "N" ...
> $ study.enter.date : POSIXct[1:256], format: "2009-08-03" "2009-08-10" ...
> $ death.date : chr [1:256] "43131" "40069" "41011" "40067" ...
> $ mortality..3m. : num [1:256] 0 1 0 1 0 0 0 0 0 0 ...
> $ mortality..1yr. : num [1:256] 0 1 0 1 0 0 0 0 0 0 ...
> $ composite.outcome..lytics..surgery.or..3m.mortality: num [1:256] 0 1 1 1 0 0 0 0 0 0 ...
> $ notes : chr [1:256] NA NA NA NA ...
> $ product : chr [1:256] "TARGET96" "TARGET96" "TARGET96" "TARGET96" ...
> $ panelversion : int [1:256] 3028 3028 3028 3028 3028 3028 3028 3028 3028 3028 ...
> $ plateid : chr [1:256] "GB390725-RB_1" "GB390725-RB_1" "GB390725-RB_2" "GB390725-RB_2" ...
> $ wellid : chr [1:256] "A1" "E6" "A11" "F4" ...
> $ sampletype : chr [1:256] "SAMPLE" "SAMPLE" "SAMPLE" "SAMPLE" ...
> $ ct : num [1:256] 8.87 12.41 9.57 8.92 8.5 ...
> $ lodnpx : num [1:256] -9.42 -9.42 -9.34 -9.34 -9.63 ...
> $ belowlod : logi [1:256] FALSE FALSE FALSE FALSE FALSE FALSE ...
> $ sampleqc : chr [1:256] "PASS" "PASS" "PASS" "PASS" ...
> $ assayqc : chr [1:256] "PASS" "PASS" "PASS" "PASS" ...
> $ softwareversion : chr [1:256] "2.0.2" "2.0.2" "2.0.2" "2.0.2" ...
> $ softwarename : chr [1:256] "NPX Signature" "NPX Signature" "NPX Signature" "NPX Signature" ...
> $ reason_excluded : logi [1:256] NA NA NA NA NA NA ...
> $ excluded : logi [1:256] FALSE FALSE FALSE FALSE FALSE FALSE ...
> $ plate : Factor w/ 3 levels "GB390725-RB_1",..: 1 1 2 2 3 1 3 2 3 1 ...
> $ infect.bi.new : num [1:256] 0 1 0 1 0 1 0 1 1 0 ...
> $ comp.out : num [1:256] 0 1 1 1 0 0 0 0 0 0 ...Participant age, sex, and infection status are shown below. As is the
final.diagnosis.1 variable that was used to derive the
infection status variable, infect.
>
> level Overall
> n 256
> age (mean (SD)) 67.14 (16.21)
> female (%) 0 172 (67.2)
> 1 84 (32.8)
> plate (%) GB390725-RB_1 83 (32.4)
> GB390725-RB_2 86 (33.6)
> GB390725-RB_3 87 (34.0)
> infect.fct (%) control 30 (21.1)
> inter 44 (31.0)
> case 68 (47.9)
> infect.num (%) 1 30 (21.1)
> 2 44 (31.0)
> 3 68 (47.9)
> infect.bi (%) 0 74 (52.1)
> 1 68 (47.9)
> comp.out (%) 0 88 (62.0)
> 1 54 (38.0)
> infect.bi.new (%) 0 114 (62.6)
> 1 68 (37.4)
> final.diagnosis.1 (%) M/breast 5 ( 2.0)
> M/colorectal 2 ( 0.8)
> M/haem 4 ( 1.6)
> M/lung/adeno 8 ( 3.1)
> M/lung/small 1 ( 0.4)
> M/lung/squamous 1 ( 0.4)
> M/lung/unsclc 1 ( 0.4)
> M/lung/x 3 ( 1.2)
> M/meso/biphasic 1 ( 0.4)
> M/meso/desmoplastic 1 ( 0.4)
> M/meso/epithelioid 12 ( 4.7)
> M/meso/sarcomatoid 6 ( 2.3)
> M/meso/x 1 ( 0.4)
> M/Mullerian 2 ( 0.8)
> M/oesophageal 2 ( 0.8)
> M/ovarian 1 ( 0.4)
> M/renal 2 ( 0.8)
> M/sarcoma 2 ( 0.8)
> M/skin 2 ( 0.8)
> M/UGI 2 ( 0.8)
> X/cardiac/u 14 ( 5.5)
> X/hepatic/u 13 ( 5.1)
> X/infection/bacterial 22 ( 8.6)
> X/infection/CPPE 44 (17.2)
> X/infection/SPE 30 (11.7)
> X/infection/utrue 46 (18.0)
> X/inflam/BAPE 14 ( 5.5)
> X/inflam/viral 1 ( 0.4)
> X/renal/u 13 ( 5.1)>
> ### Summary of continuous variables ###
>
> strata: Overall
> n miss p.miss mean sd median p25 p75 min max skew kurt
> age 256 0 0 67 16 70 56 79 18 95 -0.6 -0.2
>
> =======================================================================================
>
> ### Summary of categorical variables ###
>
> strata: Overall
> var n miss p.miss level freq percent
> female 256 0 0.0 0 172 67.2
> 1 84 32.8
>
> plate 256 0 0.0 GB390725-RB_1 83 32.4
> GB390725-RB_2 86 33.6
> GB390725-RB_3 87 34.0
>
> infect.fct 256 114 44.5 control 30 21.1
> inter 44 31.0
> case 68 47.9
>
> infect.num 256 114 44.5 1 30 21.1
> 2 44 31.0
> 3 68 47.9
>
> infect.bi 256 114 44.5 0 74 52.1
> 1 68 47.9
>
> comp.out 256 114 44.5 0 88 62.0
> 1 54 38.0
>
> infect.bi.new 256 74 28.9 0 114 62.6
> 1 68 37.4
>
> final.diagnosis.1 256 0 0.0 M/breast 5 2.0
> M/colorectal 2 0.8
> M/haem 4 1.6
> M/lung/adeno 8 3.1
> M/lung/small 1 0.4
> M/lung/squamous 1 0.4
> M/lung/unsclc 1 0.4
> M/lung/x 3 1.2
> M/meso/biphasic 1 0.4
> M/meso/desmoplastic 1 0.4
> M/meso/epithelioid 12 4.7
> M/meso/sarcomatoid 6 2.3
> M/meso/x 1 0.4
> M/Mullerian 2 0.8
> M/oesophageal 2 0.8
> M/ovarian 1 0.4
> M/renal 2 0.8
> M/sarcoma 2 0.8
> M/skin 2 0.8
> M/UGI 2 0.8
> X/cardiac/u 14 5.5
> X/hepatic/u 13 5.1
> X/infection/bacterial 22 8.6
> X/infection/CPPE 44 17.2
> X/infection/SPE 30 11.7
> X/infection/utrue 46 18.0
> X/inflam/BAPE 14 5.5
> X/inflam/viral 1 0.4
> X/renal/u 13 5.1
>
> cum.percent
> 67.2
> 100.0
>
> 32.4
> 66.0
> 100.0
>
> 21.1
> 52.1
> 100.0
>
> 21.1
> 52.1
> 100.0
>
> 52.1
> 100.0
>
> 62.0
> 100.0
>
> 62.6
> 100.0
>
> 2.0
> 2.7
> 4.3
> 7.4
> 7.8
> 8.2
> 8.6
> 9.8
> 10.2
> 10.5
> 15.2
> 17.6
> 18.0
> 18.8
> 19.5
> 19.9
> 20.7
> 21.5
> 22.3
> 23.0
> 28.5
> 33.6
> 42.2
> 59.4
> 71.1
> 89.1
> 94.5
> 94.9
> 100.0
> Protein-wide associations
Phenotypic characteristics of participants described in Phenotype information were examined for association pleural protein abundances (Pleural proteins)
Models
The formulae of linear models examined are shown in the table below:
| number | model.name | formula | n |
|---|---|---|---|
| 1 | infect.fct | proteins ~ infect.fct | 142 |
| 2 | infect.num | proteins ~ infect.num | 142 |
| 3 | infect.bi | proteins ~ infect.bi | 142 |
| 4 | comp.out | proteins ~ comp.out | 142 |
| 5 | infect.bi.new | proteins ~ infect.bi.new | 182 |
| 6 | female | proteins ~ female | 256 |
| 7 | age | proteins ~ age | 256 |
| 8 | infect.fct.plate | proteins ~ infect.fct + plate | 142 |
| 9 | infect.num.plate | proteins ~ infect.num + plate | 142 |
| 10 | infect.bi.plate | proteins ~ infect.bi + plate | 142 |
| 11 | comp.out.plate | proteins ~ comp.out + plate | 142 |
| 12 | infect.bi.new.plate | proteins ~ infect.bi.new + plate | 182 |
| 13 | female.plate | proteins ~ female + plate | 256 |
| 14 | age.plate | proteins ~ age + plate | 256 |
| 15 | infect.fct.fulladj | proteins ~ infect.fct + female + age + plate | 142 |
| 16 | infect.num.fulladj | proteins ~ infect.num + female + age + plate | 142 |
| 17 | infect.bi.fulladj | proteins ~ infect.bi + female + age + plate | 142 |
| 18 | comp.out.fulladj | proteins ~ comp.out + female + age + plate | 142 |
| 19 | infect.bi.new.fulladj | proteins ~ infect.bi.new + female + age + plate | 182 |
QQ plots
> $infect.fct
>
> $infect.num
>
> $infect.bi
>
> $comp.out
>
> $infect.bi.new
>
> $female
>
> $age
>
> $infect.fct.plate
>
> $infect.num.plate
>
> $infect.bi.plate
>
> $comp.out.plate
>
> $infect.bi.new.plate
>
> $female.plate
>
> $age.plate
>
> $infect.fct.fulladj
>
> $infect.num.fulladj
>
> $infect.bi.fulladj
>
> $comp.out.fulladj
>
> $infect.bi.new.fulladj
Volcano plots
> $infect.fct
> NULL
>
> $infect.num
>
> $infect.bi
>
> $comp.out
>
> $infect.bi.new
>
> $female
>
> $age
>
> $infect.fct.plate
> NULL
>
> $infect.num.plate
>
> $infect.bi.plate
>
> $comp.out.plate
>
> $infect.bi.new.plate
>
> $female.plate
>
> $age.plate
>
> $infect.fct.fulladj
> NULL
>
> $infect.num.fulladj
>
> $infect.bi.fulladj
>
> $comp.out.fulladj
>
> $infect.bi.new.fulladj
Hit counts per model
Number of bonferroni (p< 0.05/92) and fdr adjusted (fdr p < 0.05) hits per model
| number | model.name | formula | n | bonf.sig | fdr.sig |
|---|---|---|---|---|---|
| 1 | infect.fct | proteins ~ infect.fct | 142 | 36 | 50 |
| 2 | infect.num | proteins ~ infect.num | 142 | 37 | 54 |
| 3 | infect.bi | proteins ~ infect.bi | 142 | 36 | 54 |
| 4 | comp.out | proteins ~ comp.out | 142 | 23 | 36 |
| 5 | infect.bi.new | proteins ~ infect.bi.new | 182 | 46 | 66 |
| 6 | female | proteins ~ female | 256 | 2 | 4 |
| 7 | age | proteins ~ age | 256 | 25 | 48 |
| 8 | infect.fct.plate | proteins ~ infect.fct + plate | 142 | 36 | 51 |
| 9 | infect.num.plate | proteins ~ infect.num + plate | 142 | 37 | 52 |
| 10 | infect.bi.plate | proteins ~ infect.bi + plate | 142 | 35 | 54 |
| 11 | comp.out.plate | proteins ~ comp.out + plate | 142 | 24 | 35 |
| 12 | infect.bi.new.plate | proteins ~ infect.bi.new + plate | 182 | 46 | 66 |
| 13 | female.plate | proteins ~ female + plate | 256 | 2 | 4 |
| 14 | age.plate | proteins ~ age + plate | 256 | 26 | 48 |
| 15 | infect.fct.fulladj | proteins ~ infect.fct + female + age + plate | 142 | 32 | 47 |
| 16 | infect.num.fulladj | proteins ~ infect.num + female + age + plate | 142 | 34 | 51 |
| 17 | infect.bi.fulladj | proteins ~ infect.bi + female + age + plate | 142 | 30 | 45 |
| 18 | comp.out.fulladj | proteins ~ comp.out + female + age + plate | 142 | 23 | 34 |
| 19 | infect.bi.new.fulladj | proteins ~ infect.bi.new + female + age + plate | 182 | 43 | 56 |
Top hits
$infect.fct
| feature_id | uniprot | gene | f | p.value | infect.fctinter.estimate | infect.fctinter.se | infect.fctinter.t | infect.fctinter.p.value | infect.fctcase.estimate | infect.fctcase.se | infect.fctcase.t | infect.fctcase.p.value | n | p.adjust |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OID00471 | P10145 | IL8 | 40.792 | 1.151406e-14 | 2.445 | 0.435 | 5.618 | 1.018206e-07 | 3.638 | 0.403 | 9.029 | 1.286992e-15 | 142 | 1.059293e-12 |
| OID00494 | P13725 | OSM | 38.434 | 5.168685e-14 | 1.800 | 0.487 | 3.694 | 3.169406e-04 | 3.820 | 0.451 | 8.467 | 3.197543e-14 | 142 | 4.755190e-12 |
| OID00560 | P00813 | ADA | 37.691 | 8.354244e-14 | 1.098 | 0.421 | 2.610 | 1.005735e-02 | 3.124 | 0.389 | 8.023 | 3.863748e-13 | 142 | 7.685905e-12 |
| OID00506 | O43557 | TNFSF14 | 33.713 | 1.156989e-12 | 0.516 | 0.541 | 0.953 | 3.423543e-01 | 3.438 | 0.501 | 6.863 | 2.048581e-10 | 142 | 1.064430e-10 |
| OID00520 | P42830 | CXCL5 | 32.810 | 2.130872e-12 | 3.163 | 0.675 | 4.684 | 6.611455e-06 | 5.047 | 0.625 | 8.074 | 2.904586e-13 | 142 | 1.960403e-10 |
| OID00532 | P10147 | CCL3 | 32.383 | 2.849321e-12 | 0.927 | 0.512 | 1.810 | 7.249174e-02 | 3.400 | 0.474 | 7.173 | 3.992927e-11 | 142 | 2.621376e-10 |
| OID00517 | Q13478 | IL-18R1 | 31.442 | 5.430920e-12 | 0.726 | 0.274 | 2.644 | 9.129161e-03 | 1.888 | 0.254 | 7.428 | 1.010442e-11 | 142 | 4.996446e-10 |
| OID00493 | P01583 | IL-1 alpha | 30.696 | 9.097134e-12 | 1.042 | 0.632 | 1.649 | 1.014864e-01 | 4.056 | 0.585 | 6.930 | 1.443705e-10 | 142 | 8.369363e-10 |
| OID00474 | P80098 | MCP-3 | 30.081 | 1.395527e-11 | 2.053 | 0.511 | 4.016 | 9.629013e-05 | 3.626 | 0.473 | 7.666 | 2.779917e-12 | 142 | 1.283885e-09 |
| OID00547 | P15018 | LIF | 27.822 | 6.872673e-11 | 1.768 | 0.431 | 4.104 | 6.900959e-05 | 2.956 | 0.399 | 7.410 | 1.114735e-11 | 142 | 6.322859e-09 |
$infect.num
| feature_id | uniprot | gene | estimate | se | t | p.value | n | p.adjust |
|---|---|---|---|---|---|---|---|---|
| OID00494 | P13725 | OSM | 1.925 | 0.219 | 8.792 | 4.818058e-15 | 142 | 4.432613e-13 |
| OID00471 | P10145 | IL8 | 1.735 | 0.198 | 8.773 | 5.375617e-15 | 142 | 4.945568e-13 |
| OID00560 | P00813 | ADA | 1.624 | 0.190 | 8.539 | 2.041545e-14 | 142 | 1.878221e-12 |
| OID00520 | P42830 | CXCL5 | 2.438 | 0.305 | 7.998 | 4.296767e-13 | 142 | 3.953026e-11 |
| OID00517 | Q13478 | IL-18R1 | 0.973 | 0.124 | 7.865 | 8.990771e-13 | 142 | 8.271509e-11 |
| OID00474 | P80098 | MCP-3 | 1.781 | 0.230 | 7.751 | 1.684507e-12 | 142 | 1.549746e-10 |
| OID00532 | P10147 | CCL3 | 1.804 | 0.233 | 7.742 | 1.773699e-12 | 142 | 1.631803e-10 |
| OID00506 | O43557 | TNFSF14 | 1.881 | 0.250 | 7.525 | 5.831190e-12 | 142 | 5.364694e-10 |
| OID00493 | P01583 | IL-1 alpha | 2.160 | 0.288 | 7.503 | 6.565723e-12 | 142 | 6.040465e-10 |
| OID00547 | P15018 | LIF | 1.439 | 0.194 | 7.417 | 1.045204e-11 | 142 | 9.615879e-10 |
$infect.bi
| feature_id | uniprot | gene | estimate | se | t | p.value | n | p.adjust |
|---|---|---|---|---|---|---|---|---|
| OID00506 | O43557 | TNFSF14 | 3.132 | 0.384 | 8.159 | 1.750448e-13 | 142 | 1.610412e-11 |
| OID00560 | P00813 | ADA | 2.472 | 0.305 | 8.114 | 2.245166e-13 | 142 | 2.065553e-11 |
| OID00532 | P10147 | CCL3 | 2.849 | 0.366 | 7.779 | 1.449280e-12 | 142 | 1.333338e-10 |
| OID00494 | P13725 | OSM | 2.749 | 0.361 | 7.615 | 3.562077e-12 | 142 | 3.277111e-10 |
| OID00493 | P01583 | IL-1 alpha | 3.436 | 0.451 | 7.613 | 3.596543e-12 | 142 | 3.308820e-10 |
| OID00517 | Q13478 | IL-18R1 | 1.456 | 0.199 | 7.321 | 1.758473e-11 | 142 | 1.617795e-09 |
| OID00503 | P01135 | TGF-alpha | 1.786 | 0.254 | 7.040 | 7.905369e-11 | 142 | 7.272939e-09 |
| OID00485 | Q16552 | IL-17A | 3.610 | 0.556 | 6.498 | 1.325538e-09 | 142 | 1.219495e-07 |
| OID00480 | P01137 | LAP TGF-beta-1 | 0.909 | 0.140 | 6.481 | 1.446752e-09 | 142 | 1.331012e-07 |
| OID00471 | P10145 | IL8 | 2.184 | 0.341 | 6.408 | 2.095754e-09 | 142 | 1.928094e-07 |
$comp.out
| feature_id | uniprot | gene | estimate | se | t | p.value | n | p.adjust |
|---|---|---|---|---|---|---|---|---|
| OID00520 | P42830 | CXCL5 | 3.434 | 0.521 | 6.597 | 7.974417e-10 | 142 | 7.336464e-08 |
| OID00494 | P13725 | OSM | 2.389 | 0.393 | 6.078 | 1.092128e-08 | 142 | 1.004758e-06 |
| OID00532 | P10147 | CCL3 | 2.346 | 0.405 | 5.791 | 4.409204e-08 | 142 | 4.056468e-06 |
| OID00485 | Q16552 | IL-17A | 3.366 | 0.587 | 5.735 | 5.771884e-08 | 142 | 5.310133e-06 |
| OID00517 | Q13478 | IL-18R1 | 1.236 | 0.217 | 5.702 | 6.741430e-08 | 142 | 6.202116e-06 |
| OID00503 | P01135 | TGF-alpha | 1.558 | 0.274 | 5.690 | 7.136774e-08 | 142 | 6.565832e-06 |
| OID00472 | P15692 | VEGFA | 0.760 | 0.137 | 5.548 | 1.397401e-07 | 142 | 1.285609e-05 |
| OID00471 | P10145 | IL8 | 1.997 | 0.361 | 5.525 | 1.554160e-07 | 142 | 1.429828e-05 |
| OID00493 | P01583 | IL-1 alpha | 2.761 | 0.501 | 5.516 | 1.622447e-07 | 142 | 1.492651e-05 |
| OID00506 | O43557 | TNFSF14 | 2.348 | 0.437 | 5.374 | 3.135013e-07 | 142 | 2.884212e-05 |
$infect.bi.new
| feature_id | uniprot | gene | estimate | se | t | p.value | n | p.adjust |
|---|---|---|---|---|---|---|---|---|
| OID00560 | P00813 | ADA | 2.997 | 0.274 | 10.929 | 1.194356e-21 | 182 | 1.098807e-19 |
| OID00506 | O43557 | TNFSF14 | 3.482 | 0.320 | 10.884 | 1.604814e-21 | 182 | 1.476429e-19 |
| OID00494 | P13725 | OSM | 3.487 | 0.324 | 10.751 | 3.876123e-21 | 182 | 3.566033e-19 |
| OID00532 | P10147 | CCL3 | 3.118 | 0.304 | 10.265 | 9.387083e-20 | 182 | 8.636117e-18 |
| OID00493 | P01583 | IL-1 alpha | 3.770 | 0.373 | 10.118 | 2.453722e-19 | 182 | 2.257424e-17 |
| OID00517 | Q13478 | IL-18R1 | 1.716 | 0.174 | 9.848 | 1.412641e-18 | 182 | 1.299630e-16 |
| OID00474 | P80098 | MCP-3 | 3.362 | 0.361 | 9.310 | 4.445174e-17 | 182 | 4.089560e-15 |
| OID00503 | P01135 | TGF-alpha | 1.917 | 0.210 | 9.124 | 1.443610e-16 | 182 | 1.328121e-14 |
| OID00520 | P42830 | CXCL5 | 4.032 | 0.449 | 8.989 | 3.380271e-16 | 182 | 3.109850e-14 |
| OID00485 | Q16552 | IL-17A | 4.133 | 0.465 | 8.884 | 6.515655e-16 | 182 | 5.994403e-14 |
$female
| feature_id | uniprot | gene | estimate | se | t | p.value | n | p.adjust |
|---|---|---|---|---|---|---|---|---|
| OID00512 | Q9NSA1 | FGF-21 | 1.092 | 0.302 | 3.610 | 3.685466e-04 | 256 | 3.390629e-02 |
| OID00534 | P80162 | CXCL6 | 0.650 | 0.181 | 3.597 | 3.870928e-04 | 256 | 3.561253e-02 |
| OID00481 | P00749 | uPA | -0.244 | 0.075 | -3.245 | 1.331245e-03 | 256 | 1.224745e-01 |
| OID00480 | P01137 | LAP TGF-beta-1 | -0.379 | 0.119 | -3.171 | 1.705441e-03 | 256 | 1.569005e-01 |
| OID00554 | P20783 | NT-3 | -0.585 | 0.200 | -2.925 | 3.760519e-03 | 256 | 3.459677e-01 |
| OID00476 | Q9H5V8 | CDCP1 | -0.398 | 0.142 | -2.798 | 5.536915e-03 | 256 | 5.093962e-01 |
| OID00472 | P15692 | VEGFA | -0.338 | 0.123 | -2.738 | 6.612371e-03 | 256 | 6.083381e-01 |
| OID00513 | Q99731 | CCL19 | 0.529 | 0.198 | 2.670 | 8.069177e-03 | 256 | 7.423643e-01 |
| OID00530 | P55773 | CCL23 | 0.252 | 0.099 | 2.554 | 1.124655e-02 | 256 | 1.000000e+00 |
| OID00528 | P22301 | IL10 | 0.456 | 0.188 | 2.428 | 1.585718e-02 | 256 | 1.000000e+00 |
$age
| feature_id | uniprot | gene | estimate | se | t | p.value | n | p.adjust |
|---|---|---|---|---|---|---|---|---|
| OID00539 | Q9NRJ3 | CCL28 | 0.017 | 0.002 | 6.917 | 3.729325e-11 | 256 | 3.430979e-09 |
| OID00551 | O15444 | CCL25 | 0.030 | 0.004 | 6.830 | 6.245990e-11 | 256 | 5.746311e-09 |
| OID00521 | O14788 | TRANCE | -0.043 | 0.006 | -6.775 | 8.617535e-11 | 256 | 7.928132e-09 |
| OID00524 | Q13007 | IL-24 | -0.039 | 0.006 | -6.620 | 2.126886e-10 | 256 | 1.956735e-08 |
| OID00491 | P28325 | CST5 | 0.025 | 0.004 | 6.314 | 1.203104e-09 | 256 | 1.106856e-07 |
| OID00485 | Q16552 | IL-17A | -0.078 | 0.013 | -6.131 | 3.319032e-09 | 256 | 3.053509e-07 |
| OID00537 | Q9NYY1 | IL-20 | -0.011 | 0.002 | -6.066 | 4.737243e-09 | 256 | 4.358264e-07 |
| OID00493 | P01583 | IL-1 alpha | -0.056 | 0.010 | -5.579 | 6.198957e-08 | 256 | 5.703041e-06 |
| OID00506 | O43557 | TNFSF14 | -0.051 | 0.009 | -5.547 | 7.273614e-08 | 256 | 6.691725e-06 |
| OID00497 | Q969D9 | TSLP | -0.036 | 0.007 | -5.519 | 8.415167e-08 | 256 | 7.741953e-06 |
$infect.fct.plate
| feature_id | uniprot | gene | f | p.value | infect.fctinter.estimate | infect.fctinter.se | infect.fctinter.t | infect.fctinter.p.value | infect.fctcase.estimate | infect.fctcase.se | infect.fctcase.t | infect.fctcase.p.value | n | p.adjust |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OID00471 | P10145 | IL8 | 40.441 | 1.574265e-14 | 2.443 | 0.438 | 5.579 | 1.247352e-07 | 3.645 | 0.405 | 8.990 | 1.772363e-15 | 142 | 1.448324e-12 |
| OID00494 | P13725 | OSM | 37.957 | 7.643807e-14 | 1.807 | 0.488 | 3.704 | 3.064442e-04 | 3.807 | 0.452 | 8.425 | 4.379990e-14 | 142 | 7.032303e-12 |
| OID00560 | P00813 | ADA | 37.055 | 1.369683e-13 | 1.102 | 0.422 | 2.611 | 1.004131e-02 | 3.114 | 0.391 | 7.966 | 5.662214e-13 | 142 | 1.260108e-11 |
| OID00506 | O43557 | TNFSF14 | 33.071 | 1.910030e-12 | 0.516 | 0.543 | 0.951 | 3.433746e-01 | 3.421 | 0.503 | 6.804 | 2.904822e-10 | 142 | 1.757228e-10 |
| OID00520 | P42830 | CXCL5 | 32.275 | 3.273649e-12 | 3.167 | 0.680 | 4.658 | 7.476900e-06 | 5.043 | 0.630 | 8.010 | 4.449227e-13 | 142 | 3.011757e-10 |
| OID00532 | P10147 | CCL3 | 31.846 | 4.384685e-12 | 0.924 | 0.513 | 1.800 | 7.407088e-02 | 3.383 | 0.475 | 7.117 | 5.612528e-11 | 142 | 4.033910e-10 |
| OID00517 | Q13478 | IL-18R1 | 30.848 | 8.697417e-12 | 0.726 | 0.276 | 2.627 | 9.589298e-03 | 1.884 | 0.256 | 7.362 | 1.519183e-11 | 142 | 8.001624e-10 |
| OID00547 | P15018 | LIF | 30.205 | 1.357330e-11 | 1.772 | 0.419 | 4.229 | 4.266656e-05 | 2.994 | 0.388 | 7.715 | 2.250523e-12 | 142 | 1.248744e-09 |
| OID00493 | P01583 | IL-1 alpha | 30.104 | 1.455512e-11 | 1.042 | 0.635 | 1.641 | 1.031482e-01 | 4.038 | 0.588 | 6.868 | 2.074110e-10 | 142 | 1.339071e-09 |
| OID00474 | P80098 | MCP-3 | 29.916 | 1.658490e-11 | 2.056 | 0.514 | 4.002 | 1.023049e-04 | 3.637 | 0.476 | 7.645 | 3.302405e-12 | 142 | 1.525811e-09 |
$infect.num.plate
| feature_id | uniprot | gene | estimate | se | t | p.value | n | p.adjust |
|---|---|---|---|---|---|---|---|---|
| OID00471 | P10145 | IL8 | 1.740 | 0.199 | 8.741 | 7.007198e-15 | 142 | 6.446622e-13 |
| OID00494 | P13725 | OSM | 1.916 | 0.219 | 8.739 | 7.097413e-15 | 142 | 6.529620e-13 |
| OID00560 | P00813 | ADA | 1.618 | 0.191 | 8.472 | 3.221973e-14 | 142 | 2.964215e-12 |
| OID00520 | P42830 | CXCL5 | 2.435 | 0.307 | 7.930 | 6.671000e-13 | 142 | 6.137320e-11 |
| OID00517 | Q13478 | IL-18R1 | 0.971 | 0.125 | 7.792 | 1.430294e-12 | 142 | 1.315871e-10 |
| OID00547 | P15018 | LIF | 1.460 | 0.189 | 7.736 | 1.945890e-12 | 142 | 1.790219e-10 |
| OID00474 | P80098 | MCP-3 | 1.787 | 0.231 | 7.731 | 1.997804e-12 | 142 | 1.837979e-10 |
| OID00532 | P10147 | CCL3 | 1.794 | 0.234 | 7.679 | 2.655369e-12 | 142 | 2.442940e-10 |
| OID00506 | O43557 | TNFSF14 | 1.870 | 0.251 | 7.456 | 8.918821e-12 | 142 | 8.205315e-10 |
| OID00493 | P01583 | IL-1 alpha | 2.150 | 0.289 | 7.433 | 1.010247e-11 | 142 | 9.294273e-10 |
$infect.bi.plate
| feature_id | uniprot | gene | estimate | se | t | p.value | n | p.adjust |
|---|---|---|---|---|---|---|---|---|
| OID00506 | O43557 | TNFSF14 | 3.114 | 0.385 | 8.080 | 2.911567e-13 | 142 | 2.678641e-11 |
| OID00560 | P00813 | ADA | 2.459 | 0.306 | 8.036 | 3.721765e-13 | 142 | 3.424024e-11 |
| OID00532 | P10147 | CCL3 | 2.834 | 0.367 | 7.713 | 2.209400e-12 | 142 | 2.032648e-10 |
| OID00494 | P13725 | OSM | 2.732 | 0.362 | 7.546 | 5.487093e-12 | 142 | 5.048126e-10 |
| OID00493 | P01583 | IL-1 alpha | 3.419 | 0.454 | 7.538 | 5.735502e-12 | 142 | 5.276662e-10 |
| OID00517 | Q13478 | IL-18R1 | 1.453 | 0.200 | 7.249 | 2.721175e-11 | 142 | 2.503481e-09 |
| OID00503 | P01135 | TGF-alpha | 1.769 | 0.253 | 6.982 | 1.119821e-10 | 142 | 1.030235e-08 |
| OID00485 | Q16552 | IL-17A | 3.591 | 0.553 | 6.489 | 1.434744e-09 | 142 | 1.319964e-07 |
| OID00480 | P01137 | LAP TGF-beta-1 | 0.909 | 0.141 | 6.438 | 1.861760e-09 | 142 | 1.712819e-07 |
| OID00471 | P10145 | IL8 | 2.193 | 0.343 | 6.391 | 2.360470e-09 | 142 | 2.171632e-07 |
$comp.out.plate
| feature_id | uniprot | gene | estimate | se | t | p.value | n | p.adjust |
|---|---|---|---|---|---|---|---|---|
| OID00520 | P42830 | CXCL5 | 3.444 | 0.526 | 6.543 | 1.088756e-09 | 142 | 1.001656e-07 |
| OID00494 | P13725 | OSM | 2.372 | 0.396 | 5.991 | 1.718156e-08 | 142 | 1.580704e-06 |
| OID00532 | P10147 | CCL3 | 2.315 | 0.409 | 5.663 | 8.313001e-08 | 142 | 7.647961e-06 |
| OID00517 | Q13478 | IL-18R1 | 1.234 | 0.219 | 5.626 | 9.904845e-08 | 142 | 9.112458e-06 |
| OID00485 | Q16552 | IL-17A | 3.307 | 0.589 | 5.616 | 1.037101e-07 | 142 | 9.541333e-06 |
| OID00503 | P01135 | TGF-alpha | 1.525 | 0.275 | 5.538 | 1.492591e-07 | 142 | 1.373183e-05 |
| OID00471 | P10145 | IL8 | 2.021 | 0.365 | 5.538 | 1.495283e-07 | 142 | 1.375660e-05 |
| OID00472 | P15692 | VEGFA | 0.765 | 0.138 | 5.520 | 1.622837e-07 | 142 | 1.493010e-05 |
| OID00493 | P01583 | IL-1 alpha | 2.730 | 0.506 | 5.400 | 2.835860e-07 | 142 | 2.608991e-05 |
| OID00474 | P80098 | MCP-3 | 2.207 | 0.409 | 5.399 | 2.846556e-07 | 142 | 2.618831e-05 |
$infect.bi.new.plate
| feature_id | uniprot | gene | estimate | se | t | p.value | n | p.adjust |
|---|---|---|---|---|---|---|---|---|
| OID00560 | P00813 | ADA | 2.994 | 0.276 | 10.849 | 2.265079e-21 | 182 | 2.083873e-19 |
| OID00506 | O43557 | TNFSF14 | 3.467 | 0.321 | 10.789 | 3.357381e-21 | 182 | 3.088790e-19 |
| OID00494 | P13725 | OSM | 3.484 | 0.326 | 10.687 | 6.576807e-21 | 182 | 6.050662e-19 |
| OID00532 | P10147 | CCL3 | 3.094 | 0.304 | 10.163 | 2.011831e-19 | 182 | 1.850885e-17 |
| OID00493 | P01583 | IL-1 alpha | 3.749 | 0.374 | 10.014 | 5.266396e-19 | 182 | 4.845084e-17 |
| OID00517 | Q13478 | IL-18R1 | 1.715 | 0.176 | 9.770 | 2.534297e-18 | 182 | 2.331553e-16 |
| OID00474 | P80098 | MCP-3 | 3.372 | 0.363 | 9.281 | 5.741965e-17 | 182 | 5.282607e-15 |
| OID00503 | P01135 | TGF-alpha | 1.903 | 0.210 | 9.045 | 2.532326e-16 | 182 | 2.329740e-14 |
| OID00520 | P42830 | CXCL5 | 4.027 | 0.452 | 8.914 | 5.751981e-16 | 182 | 5.291823e-14 |
| OID00485 | Q16552 | IL-17A | 4.081 | 0.464 | 8.792 | 1.234450e-15 | 182 | 1.135694e-13 |
$female.plate
| feature_id | uniprot | gene | estimate | se | t | p.value | n | p.adjust |
|---|---|---|---|---|---|---|---|---|
| OID00512 | Q9NSA1 | FGF-21 | 1.106 | 0.305 | 3.625 | 3.490570e-04 | 256 | 3.211325e-02 |
| OID00534 | P80162 | CXCL6 | 0.650 | 0.182 | 3.567 | 4.314778e-04 | 256 | 3.969596e-02 |
| OID00481 | P00749 | uPA | -0.255 | 0.076 | -3.363 | 8.905882e-04 | 256 | 8.193412e-02 |
| OID00480 | P01137 | LAP TGF-beta-1 | -0.388 | 0.120 | -3.227 | 1.418667e-03 | 256 | 1.305174e-01 |
| OID00554 | P20783 | NT-3 | -0.568 | 0.202 | -2.820 | 5.177238e-03 | 256 | 4.763059e-01 |
| OID00476 | Q9H5V8 | CDCP1 | -0.401 | 0.143 | -2.806 | 5.409842e-03 | 256 | 4.977054e-01 |
| OID00472 | P15692 | VEGFA | -0.343 | 0.124 | -2.759 | 6.229267e-03 | 256 | 5.730926e-01 |
| OID00513 | Q99731 | CCL19 | 0.537 | 0.200 | 2.689 | 7.648306e-03 | 256 | 7.036442e-01 |
| OID00528 | P22301 | IL10 | 0.483 | 0.187 | 2.582 | 1.037418e-02 | 256 | 9.544243e-01 |
| OID00530 | P55773 | CCL23 | 0.248 | 0.099 | 2.492 | 1.335111e-02 | 256 | 1.000000e+00 |
$age.plate
| feature_id | uniprot | gene | estimate | se | t | p.value | n | p.adjust |
|---|---|---|---|---|---|---|---|---|
| OID00539 | Q9NRJ3 | CCL28 | 0.018 | 0.002 | 7.247 | 5.191004e-12 | 256 | 4.775724e-10 |
| OID00521 | O14788 | TRANCE | -0.044 | 0.006 | -6.972 | 2.733985e-11 | 256 | 2.515266e-09 |
| OID00551 | O15444 | CCL25 | 0.031 | 0.004 | 6.915 | 3.839852e-11 | 256 | 3.532664e-09 |
| OID00524 | Q13007 | IL-24 | -0.039 | 0.006 | -6.478 | 4.834237e-10 | 256 | 4.447498e-08 |
| OID00491 | P28325 | CST5 | 0.025 | 0.004 | 6.344 | 1.032973e-09 | 256 | 9.503350e-08 |
| OID00485 | Q16552 | IL-17A | -0.078 | 0.013 | -6.109 | 3.777703e-09 | 256 | 3.475487e-07 |
| OID00537 | Q9NYY1 | IL-20 | -0.011 | 0.002 | -6.055 | 5.061662e-09 | 256 | 4.656729e-07 |
| OID00493 | P01583 | IL-1 alpha | -0.057 | 0.010 | -5.685 | 3.617836e-08 | 256 | 3.328409e-06 |
| OID00506 | O43557 | TNFSF14 | -0.052 | 0.009 | -5.636 | 4.638017e-08 | 256 | 4.266976e-06 |
| OID00497 | Q969D9 | TSLP | -0.037 | 0.007 | -5.569 | 6.559671e-08 | 256 | 6.034897e-06 |
$infect.fct.fulladj
| feature_id | uniprot | gene | f | p.value | infect.fctinter.estimate | infect.fctinter.se | infect.fctinter.t | infect.fctinter.p.value | infect.fctcase.estimate | infect.fctcase.se | infect.fctcase.t | infect.fctcase.p.value | n | p.adjust |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OID00471 | P10145 | IL8 | 36.097 | 2.767321e-13 | 2.434 | 0.440 | 5.538 | 1.541841e-07 | 3.553 | 0.418 | 8.495 | 3.201632e-14 | 142 | 2.545936e-11 |
| OID00494 | P13725 | OSM | 32.087 | 3.974159e-12 | 1.778 | 0.476 | 3.732 | 2.791033e-04 | 3.556 | 0.453 | 7.843 | 1.191209e-12 | 142 | 3.656227e-10 |
| OID00560 | P00813 | ADA | 30.753 | 9.878257e-12 | 1.062 | 0.421 | 2.522 | 1.283472e-02 | 2.938 | 0.401 | 7.333 | 1.875102e-11 | 142 | 9.087997e-10 |
| OID00520 | P42830 | CXCL5 | 29.693 | 2.053599e-11 | 3.176 | 0.686 | 4.629 | 8.545620e-06 | 5.027 | 0.653 | 7.698 | 2.618073e-12 | 142 | 1.889311e-09 |
| OID00506 | O43557 | TNFSF14 | 27.560 | 9.187858e-11 | 0.493 | 0.535 | 0.922 | 3.579182e-01 | 3.191 | 0.509 | 6.269 | 4.557791e-09 | 142 | 8.452830e-09 |
| OID00532 | P10147 | CCL3 | 27.290 | 1.113156e-10 | 0.915 | 0.513 | 1.782 | 7.696916e-02 | 3.256 | 0.489 | 6.664 | 6.200890e-10 | 142 | 1.024104e-08 |
| OID00547 | P15018 | LIF | 26.362 | 2.163028e-10 | 1.767 | 0.409 | 4.323 | 2.969540e-05 | 2.820 | 0.389 | 7.251 | 2.896449e-11 | 142 | 1.989986e-08 |
| OID00517 | Q13478 | IL-18R1 | 26.066 | 2.676114e-10 | 0.717 | 0.275 | 2.607 | 1.017389e-02 | 1.794 | 0.262 | 6.852 | 2.350786e-10 | 142 | 2.462025e-08 |
| OID00493 | P01583 | IL-1 alpha | 25.604 | 3.737053e-10 | 1.039 | 0.620 | 1.677 | 9.577334e-02 | 3.793 | 0.590 | 6.433 | 2.004019e-09 | 142 | 3.438089e-08 |
| OID00474 | P80098 | MCP-3 | 25.214 | 4.961115e-10 | 2.026 | 0.509 | 3.978 | 1.127320e-04 | 3.427 | 0.485 | 7.069 | 7.581914e-11 | 142 | 4.564226e-08 |
$infect.num.fulladj
| feature_id | uniprot | gene | estimate | se | t | p.value | n | p.adjust |
|---|---|---|---|---|---|---|---|---|
| OID00471 | P10145 | IL8 | 1.696 | 0.207 | 8.204 | 1.568546e-13 | 142 | 1.443063e-11 |
| OID00494 | P13725 | OSM | 1.778 | 0.221 | 8.041 | 3.878951e-13 | 142 | 3.568635e-11 |
| OID00560 | P00813 | ADA | 1.519 | 0.196 | 7.731 | 2.119135e-12 | 142 | 1.949604e-10 |
| OID00520 | P42830 | CXCL5 | 2.432 | 0.320 | 7.594 | 4.470516e-12 | 142 | 4.112875e-10 |
| OID00517 | Q13478 | IL-18R1 | 0.919 | 0.128 | 7.181 | 4.109670e-11 | 142 | 3.780896e-09 |
| OID00547 | P15018 | LIF | 1.366 | 0.191 | 7.170 | 4.343117e-11 | 142 | 3.995668e-09 |
| OID00532 | P10147 | CCL3 | 1.716 | 0.241 | 7.119 | 5.679747e-11 | 142 | 5.225368e-09 |
| OID00474 | P80098 | MCP-3 | 1.675 | 0.237 | 7.069 | 7.430862e-11 | 142 | 6.836393e-09 |
| OID00493 | P01583 | IL-1 alpha | 2.002 | 0.291 | 6.885 | 1.947416e-10 | 142 | 1.791622e-08 |
| OID00506 | O43557 | TNFSF14 | 1.731 | 0.254 | 6.804 | 2.962744e-10 | 142 | 2.725724e-08 |
$infect.bi.fulladj
| feature_id | uniprot | gene | estimate | se | t | p.value | n | p.adjust |
|---|---|---|---|---|---|---|---|---|
| OID00506 | O43557 | TNFSF14 | 2.892 | 0.392 | 7.371 | 1.491075e-11 | 142 | 1.371789e-09 |
| OID00560 | P00813 | ADA | 2.295 | 0.315 | 7.284 | 2.372586e-11 | 142 | 2.182779e-09 |
| OID00532 | P10147 | CCL3 | 2.702 | 0.380 | 7.113 | 5.878419e-11 | 142 | 5.408146e-09 |
| OID00493 | P01583 | IL-1 alpha | 3.164 | 0.458 | 6.911 | 1.699493e-10 | 142 | 1.563533e-08 |
| OID00494 | P13725 | OSM | 2.479 | 0.366 | 6.774 | 3.457751e-10 | 142 | 3.181131e-08 |
| OID00517 | Q13478 | IL-18R1 | 1.359 | 0.206 | 6.594 | 8.699806e-10 | 142 | 8.003822e-08 |
| OID00503 | P01135 | TGF-alpha | 1.642 | 0.257 | 6.391 | 2.432245e-09 | 142 | 2.237666e-07 |
| OID00485 | Q16552 | IL-17A | 3.332 | 0.559 | 5.963 | 2.019881e-08 | 142 | 1.858290e-06 |
| OID00471 | P10145 | IL8 | 2.079 | 0.356 | 5.839 | 3.684152e-08 | 142 | 3.389420e-06 |
| OID00520 | P42830 | CXCL5 | 3.104 | 0.540 | 5.745 | 5.755156e-08 | 142 | 5.294744e-06 |
$comp.out.fulladj
| feature_id | uniprot | gene | estimate | se | t | p.value | n | p.adjust |
|---|---|---|---|---|---|---|---|---|
| OID00520 | P42830 | CXCL5 | 3.374 | 0.529 | 6.383 | 2.532417e-09 | 142 | 2.329824e-07 |
| OID00494 | P13725 | OSM | 2.226 | 0.378 | 5.889 | 2.887224e-08 | 142 | 2.656246e-06 |
| OID00485 | Q16552 | IL-17A | 3.125 | 0.568 | 5.503 | 1.798391e-07 | 142 | 1.654520e-05 |
| OID00532 | P10147 | CCL3 | 2.211 | 0.403 | 5.491 | 1.899536e-07 | 142 | 1.747574e-05 |
| OID00517 | Q13478 | IL-18R1 | 1.172 | 0.215 | 5.460 | 2.191901e-07 | 142 | 2.016549e-05 |
| OID00503 | P01135 | TGF-alpha | 1.438 | 0.266 | 5.406 | 2.812676e-07 | 142 | 2.587662e-05 |
| OID00472 | P15692 | VEGFA | 0.731 | 0.136 | 5.378 | 3.196154e-07 | 142 | 2.940461e-05 |
| OID00471 | P10145 | IL8 | 1.941 | 0.362 | 5.363 | 3.415542e-07 | 142 | 3.142298e-05 |
| OID00493 | P01583 | IL-1 alpha | 2.558 | 0.485 | 5.272 | 5.163680e-07 | 142 | 4.750586e-05 |
| OID00474 | P80098 | MCP-3 | 2.085 | 0.399 | 5.232 | 6.182904e-07 | 142 | 5.688272e-05 |
$infect.bi.new.fulladj
| feature_id | uniprot | gene | estimate | se | t | p.value | n | p.adjust |
|---|---|---|---|---|---|---|---|---|
| OID00560 | P00813 | ADA | 2.842 | 0.284 | 10.014 | 5.779650e-19 | 182 | 5.317278e-17 |
| OID00506 | O43557 | TNFSF14 | 3.251 | 0.326 | 9.972 | 7.538854e-19 | 182 | 6.935745e-17 |
| OID00494 | P13725 | OSM | 3.246 | 0.331 | 9.810 | 2.136238e-18 | 182 | 1.965339e-16 |
| OID00532 | P10147 | CCL3 | 2.974 | 0.314 | 9.459 | 2.002393e-17 | 182 | 1.842202e-15 |
| OID00493 | P01583 | IL-1 alpha | 3.483 | 0.378 | 9.212 | 9.526684e-17 | 182 | 8.764549e-15 |
| OID00517 | Q13478 | IL-18R1 | 1.623 | 0.180 | 8.998 | 3.640417e-16 | 182 | 3.349183e-14 |
| OID00474 | P80098 | MCP-3 | 3.220 | 0.375 | 8.582 | 4.761817e-15 | 182 | 4.380871e-13 |
| OID00520 | P42830 | CXCL5 | 4.009 | 0.469 | 8.543 | 6.062950e-15 | 182 | 5.577914e-13 |
| OID00503 | P01135 | TGF-alpha | 1.757 | 0.213 | 8.261 | 3.363260e-14 | 182 | 3.094199e-12 |
| OID00471 | P10145 | IL8 | 2.669 | 0.324 | 8.240 | 3.814632e-14 | 182 | 3.509461e-12 |
Gene-annotated volcano plots
> $infect.num.fulladj
>
> $infect.bi.fulladj
>
> $comp.out.fulladj
>
> $infect.bi.new.fulladj